PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2DL_59DE7446E.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Trihelix

Protein Properties

Length: 207aa MW: 22821 Da PI: 6.0408

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2DL_59DE7446E.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.7	2e-15	1	42	45	87
trihelix 45 rspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 r++k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+qlea Traes_2DL_59DE7446E.1 1 RNSKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLEA 42 789********************97.99*********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.3E-8	1	43	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
RNSKRCKEKW ENINKYFKKV KESNKRRPED SKTCPYFHQL EAIYRKKHNG GGSSGAAANN 60 AVVSVPAVAE HQNLNRHEIE IEGKKINDTD KRNNGGVGAA QVPTSNGQTT PTMATFDLGV 120 KKPEDAVREL NEQPHREFTT DETDSDDMGD DYTDDGEDGE DDGKMQYRIQ FQRPNPVGTN 180 NAPPPPTTAA TAAPTSTPAS SFLAMVQ

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK358911	0.0	AK358911.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1085J16.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020200393.1	1e-149	trihelix transcription factor GTL1-like isoform X1
TrEMBL	A0A453CK00	1e-150	A0A453CK00_AEGTS; Uncharacterized protein
TrEMBL	N1QPM8	1e-152	N1QPM8_AEGTA; Uncharacterized protein
STRING	EMT01729	1e-152	(Aegilops tauschii)
STRING	Traes_2DL_59DE7446E.1	1e-154	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP606	38	175

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	9e-25	Trihelix family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]