PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_607AD3522.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 318aa    MW: 35050 Da    PI: 6.4362
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_607AD3522.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.12.8e-52141561128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..............kvka...eekewyfFskrdkkyatg 71 
                            +ppGfrFhPt+eelv +yL++kv+++k++l ++i+evd+y++ePwdL++              +  a   +++ewyfFs +d+ky++g
  Traes_2DL_607AD3522.1  14 VPPGFRFHPTEEELVGYYLARKVAAQKIDL-DIIQEVDLYRIEPWDLQErcgggrggpgarqvA--AedeQSSEWYFFSFKDRKYPSG 98 
                            69****************************.99**************95689999999998542..3222445*************** PP

                    NAM  72 krknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            +r+nrat++g+Wkatg+dk+v+s+ ++ ++g++ktLvfy+grap+g+ktdW++heyrl
  Traes_2DL_607AD3522.1  99 TRTNRATAAGFWKATGRDKPVMSSrSRGVIGMRKTLVFYRGRAPNGRKTDWIIHEYRL 156
                            **********************9856678***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.19E-568177IPR003441NAC domain
PROSITE profilePS5100556.81214177IPR003441NAC domain
PfamPF023659.6E-2715156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MLAMEQHHEE ESCVPPGFRF HPTEEELVGY YLARKVAAQK IDLDIIQEVD LYRIEPWDLQ  60
ERCGGGRGGP GARQVAAEDE QSSEWYFFSF KDRKYPSGTR TNRATAAGFW KATGRDKPVM  120
SSRSRGVIGM RKTLVFYRGR APNGRKTDWI IHEYRLQTSE HAPTQEEGWV VCRAFQKPAP  180
NQRPSYIFLP PYAAAPGLGG YYDTRPWLHG QVGGDHHFLQ SAAGAAGAGA LGFPGQGAQY  240
SSDELLDSKQ SLFGNIPQLI ESPPTTTAVA GCGDTGYGIG QHGEVAAGID WNFLDSLLST  300
TQLHEYSATA ASQLHLQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-5021773168Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3730020.0AK373002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3017O09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184118.10.0NAC domain-containing protein 30-like
TrEMBLW5BV260.0W5BV26_WHEAT; Uncharacterized protein
STRINGTraes_2DL_607AD3522.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25943791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.16e-89vascular related NAC-domain protein 7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]