PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2DL_617DB5FC6.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 65aa MW: 7384.54 Da PI: 10.9739

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2DL_617DB5FC6.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	36.2	2e-11	3	44	49	90
FAR1 49 ekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 e+++r+ ++tr+gC+a+++vk + +++++++l ++HnH l+ Traes_2DL_617DB5FC6.1 3 ERKKRNVKVTRCGCNAHIVVKWCSGNTYNISSLIEHHNHGLV 44 6889999********************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.3E-9	2	44	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 65 aa Download sequence Send to blast
SNERKKRNVK VTRCGCNAHI VVKWCSGNTY NISSLIEHHN HGLVSPDKVI KSKRRVSEKA 60 KNKLS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020161160.1	6e-36	protein FAR1-RELATED SEQUENCE 7-like
TrEMBL	A0A2X0S7T1	8e-35	A0A2X0S7T1_WHEAT; Uncharacterized protein
STRING	Traes_2DL_617DB5FC6.1	5e-39	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15006	9	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-08	FAR1-related sequence 5

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]