PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_662837152.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 103aa    MW: 11528.3 Da    PI: 10.689
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_662837152.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.58.2e-291059251
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           ri+n++ rqvtfskRrngi+KKA+EL +LCdaev ++ifsstg+lyey+s
  Traes_2DL_662837152.1 10 RIDNSTSRQVTFSKRRNGIFKKAKELGILCDAEVGLVIFSSTGRLYEYAS 59
                           8***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.539161IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-38160IPR002100Transcription factor, MADS-box
CDDcd002656.30E-45277No hitNo description
SuperFamilySSF554552.49E-33288IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-28323IPR002100Transcription factor, MADS-box
PfamPF003196.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-283859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGIFK KAKELGILCD AEVGLVIFSS TGRLYEYASS  60
SMKSVIDRYG RAKEEQQLVA NPNSELKFFN TFASLLPQPT APP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-22183183MEF2C
5f28_B8e-22183183MEF2C
5f28_C8e-22183183MEF2C
5f28_D8e-22183183MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM5029001e-140AM502900.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM30 (WM30 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189046.16e-59MADS-box transcription factor 27-like isoform X1
SwissprotQ6EP497e-55MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A2X0S7A61e-57A0A2X0S7A6_WHEAT; Uncharacterized protein
TrEMBLA0A3B6CAM12e-57A0A3B6CAM1_WHEAT; Uncharacterized protein
TrEMBLA0A3B6DF791e-57A0A3B6DF79_WHEAT; Uncharacterized protein
TrEMBLA0A446L6B61e-57A0A446L6B6_TRITD; Uncharacterized protein
TrEMBLA0A446MF812e-57A0A446MF81_TRITD; Uncharacterized protein
TrEMBLA0A453C5361e-57A0A453C536_AEGTS; Uncharacterized protein
TrEMBLA0A453C5477e-58A0A453C547_AEGTS; Uncharacterized protein
TrEMBLA9J2281e-57A9J228_WHEAT; MIKC-type MADS-box transcription factor WM30
TrEMBLF2E3K91e-57F2E3K9_HORVV; Predicted protein
STRINGTraes_2DL_662837152.13e-70(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.13e-49AGAMOUS-like 21
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  3. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]