PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_68851ADC8.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 57aa    MW: 6691.53 Da    PI: 9.9481
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_68851ADC8.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.4e-16751147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           rg++++eE+ l++ +++ lG++ W+tIa ++  gRt+++ k++w+++
  Traes_2DL_68851ADC8.1  7 RGNFSEEEERLIITLHAGLGNK-WSTIATHLD-GRTDNETKNYWNTH 51
                           89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-23156IPR009057Homeodomain-like
PROSITE profilePS5129424.116256IPR017930Myb domain
SuperFamilySSF466891.58E-14455IPR009057Homeodomain-like
SMARTSM007171.2E-13654IPR001005SANT/Myb domain
PfamPF002493.2E-14751IPR001005SANT/Myb domain
CDDcd001672.75E-9952No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 57 aa     Download sequence    Send to blast
LRSDIKRGNF SEEEERLIIT LHAGLGNKWS TIATHLDGRT DNETKNYWNT HIRKKLL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM1569042e-52AM156904.1 Zea mays mRNA for transcription factor MYB2 (myb2 gene).
GenBankBT0543982e-52BT054398.1 Zea mays full-length cDNA clone ZM_BFc0030L21 mRNA, complete cds.
GenBankHF6794322e-52HF679432.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB26 protein.
GenBankHQ8586912e-52HQ858691.1 Zea mays clone UT1147 ZmMYB2 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169251.15e-33myb-related protein Zm38-like
RefseqXP_020179028.15e-33myb-related protein Zm38-like
SwissprotP813937e-24MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A1D5UHE83e-32A0A1D5UHE8_WHEAT; Uncharacterized protein
STRINGTraes_2DL_68851ADC8.18e-34(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2549955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.15e-27myb domain protein 107
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]