PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_6A10DD109.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 50aa    MW: 5567.38 Da    PI: 10.1211
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_6A10DD109.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.11e-27149351
                           --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           i+n++nrqvtfskRr g++KKA EL +LCda+ a+i+fsstg+ly++ss
  Traes_2DL_6A10DD109.1  1 IDNTTNRQVTFSKRRGGLMKKARELAILCDADLALIVFSSTGRLYDFSS 49
                           89*********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.5E-26150IPR002100Transcription factor, MADS-box
PfamPF003196.7E-26147IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-23150IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.03150IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-161328IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-162849IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 50 aa     Download sequence    Send to blast
IDNTTNRQVT FSKRRGGLMK KARELAILCD ADLALIVFSS TGRLYDFSSS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM5029035e-56AM502903.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM31C (WM31C gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153468.11e-25MADS-box transcription factor 25-like
SwissprotQ84NC55e-24MAD25_ORYSJ; MADS-box transcription factor 25
TrEMBLA0A453QQK22e-27A0A453QQK2_AEGTS; Uncharacterized protein
TrEMBLA0A453QQY62e-27A0A453QQY6_AEGTS; Uncharacterized protein
STRINGTraes_2DL_6A10DD109.12e-28(Triticum aestivum)
STRINGTraes_7BS_DC9822CEF.14e-28(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.28e-16AGAMOUS-like 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  4. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]