PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_7034372AC.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 94aa    MW: 10557.7 Da    PI: 6.7964
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_7034372AC.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding331.4e-101253346
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                           +WT  E +ll+++v ++G + W++I +++  ++   +c+ r+ +
  Traes_2DL_7034372AC.1 12 AWTDAETLLLLEGVLKHGDD-WDLITQHVR-TKNKTECIARLIQ 53
                           8*****************88.*********.888888*999866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129319.27859IPR017884SANT domain
SuperFamilySSF466891.2E-10865IPR009057Homeodomain-like
SMARTSM007171.7E-6957IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-71050IPR009057Homeodomain-like
CDDcd001673.12E-71250No hitNo description
PfamPF002491.2E-91253IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
KKESSDNHAS SAWTDAETLL LLEGVLKHGD DWDLITQHVR TKNKTECIAR LIQLPFGEHM  60
LGNINNGKSD SRFHTNQTTD GKTNHFIVKE ASSQ
Functional Description ? help Back to Top
Source Description
UniProtComponent of a multiprotein complex equivalent of the SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors. {ECO:0000269|PubMed:16055636}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1024535e-48AK102453.1 Oryza sativa Japonica Group cDNA clone:J033093P09, full insert sequence.
GenBankAL6065955e-48AL606595.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044K18, complete sequence.
GenBankAP0149605e-48AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126125e-48CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8551515e-48CR855151.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0158F13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155759.14e-57SWI/SNF complex subunit SWI3A-like
SwissprotQ8W4752e-14SWI3A_ARATH; SWI/SNF complex subunit SWI3A
TrEMBLA0A453C7P48e-61A0A453C7P4_AEGTS; Uncharacterized protein
STRINGTraes_2AL_8417C5F8B.12e-63(Triticum aestivum)
STRINGTraes_2DL_7034372AC.17e-64(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP289434
Publications ? help Back to Top
  1. Sarnowski TJ,Swiezewski S,Pawlikowska K,Kaczanowski S,Jerzmanowski A
    AtSWI3B, an Arabidopsis homolog of SWI3, a core subunit of yeast Swi/Snf chromatin remodeling complex, interacts with FCA, a regulator of flowering time.
    Nucleic Acids Res., 2002. 30(15): p. 3412-21
    [PMID:12140326]
  2. Zhou C,Miki B,Wu K
    CHB2, a member of the SWI3 gene family, is a global regulator in Arabidopsis.
    Plant Mol. Biol., 2003. 52(6): p. 1125-34
    [PMID:14682613]
  3. Sarnowski TJ, et al.
    SWI3 subunits of putative SWI/SNF chromatin-remodeling complexes play distinct roles during Arabidopsis development.
    Plant Cell, 2005. 17(9): p. 2454-72
    [PMID:16055636]
  4. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]