PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2DL_92641C6CC.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Nin-like

Protein Properties

Length: 239aa MW: 27978 Da PI: 9.0894

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2DL_92641C6CC.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.7	7.2e-26	92	141	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l d++ yF+lpi++A++ L++++++LK++CRqyGI+RWPhRkiksl Traes_2DL_92641C6CC.2 92 ASITLADIAPYFHLPIREASRALKIGVSILKQKCRQYGIPRWPHRKIKSL 141 78**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	20.055	76	161	IPR003035	RWP-RK domain
Pfam	PF02042	5.1E-21	93	141	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MLCPFRNPGL VCVPSLYNDL YMVYQFQKFQ QVPELVKRDS DEKSTRLDAE DKTCDVEVKE 60 ESGSDSDEDP QSGEELPAHV ARRRRAKKQH IASITLADIA PYFHLPIREA SRALKIGVSI 120 LKQKCRQYGI PRWPHRKIKS LDSLIGDLEF VMDDTDGDVV QKETSRQREK EREKEKEKEK 180 EKEKEKQEAI QALAKRKRLL ESEKEIIQQK PALDLMAETK LFREDVFKRR YRAKRLPGH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK372387	0.0	AK372387.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3001B21.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020158590.1	1e-171	protein RKD5-like
TrEMBL	A0A1D6RPL1	1e-171	A0A1D6RPL1_WHEAT; Uncharacterized protein
STRING	Traes_2DL_92641C6CC.2	1e-174	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10673	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	7e-34	RWP-RK domain-containing protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]