PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_9D8B5B436.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 335aa    MW: 36975.7 Da    PI: 9.0053
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_9D8B5B436.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.13.3e-291132181100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilk 82 
                            +C++C+vlr++C++dC ++p++     p++q++++ +++k++G++ +++l++a  ++  r+ +++sl+yeA+ r+ +P+yG+vg++++
  Traes_2DL_9D8B5B436.1 113 SCNGCRVLRKGCSEDCSIRPCLqwiksPEAQANATVFLAKFYGRAGLMNLINAGTDDSlRPGIFRSLLYEACGRIVNPIYGSVGLLWS 200
                            6****************************************************977666***************************** PP

                 DUF260  83 lqqqleqlkaelallkee 100
                             ++q++q+++e++l +++
  Traes_2DL_9D8B5B436.1 201 NNWQMCQAAVEAVLSGKP 218
                            ***********9987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.445112219IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-23113213IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
PVEVNKDSQV HVPVIKLPPR TRDAANTLIP APPRSQFSQN HWRRPALPSS LYHHNQSLLD  60
CIAHITSIHH HHPPLSSPSL SPRRHLLLLL GFLACAGSST YYTQGPTTTM RLSCNGCRVL  120
RKGCSEDCSI RPCLQWIKSP EAQANATVFL AKFYGRAGLM NLINAGTDDS LRPGIFRSLL  180
YEACGRIVNP IYGSVGLLWS NNWQMCQAAV EAVLSGKPIV QVSSEDAAAD RTPPLKAYDI  240
RHVSTSSAAD GRLHKVAKPG RTRFKRASSA SSHHNPSSDS NNKPQPQPRA PTAEEELDRQ  300
HRKEMQEGAF QRAPSHESSD SRHEDPVEPH CQQEA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2514260.0AK251426.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf116o06, mRNA sequence.
GenBankAK3619130.0AK361913.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001D20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176408.11e-168LOB domain-containing protein 40-like
SwissprotQ9M8864e-77LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A1D5UFV61e-166A0A1D5UFV6_WHEAT; Uncharacterized protein
STRINGTraes_2DL_9D8B5B436.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.16e-79LOB domain-containing protein 41
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]