PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_A336122501.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 79aa    MW: 8862.08 Da    PI: 12.182
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_A336122501.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.5e-182372255
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a ++++g
  Traes_2DL_A336122501.1 23 TYHGVRMRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVATLAIKG 72
                            69****998.**********843...6*******************99888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381236.0E-18179IPR017392AP2/ERF transcription factor ERF/PTI6
SuperFamilySSF541719.15E-212379IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-302379IPR001471AP2/ERF domain
PfamPF008473.2E-122372IPR001471AP2/ERF domain
PROSITE profilePS5103221.472379IPR001471AP2/ERF domain
SMARTSM003807.3E-282379IPR001471AP2/ERF domain
CDDcd000184.96E-252479No hitNo description
PRINTSPR003671.7E-102435IPR001471AP2/ERF domain
PRINTSPR003671.7E-104662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
SSSSSSSSLA ANKRPRKDSR HPTYHGVRMR SWGKWVSEIR EPRKKSRIWL GTFATAEMAA  60
RAHDVATLAI KGRAAHLNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1719791071Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1084737e-84AK108473.1 Oryza sativa Japonica Group cDNA clone:002-143-E08, full insert sequence.
GenBankAL6630007e-84AL663000.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17, complete sequence.
GenBankAP0149607e-84AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankAY2582827e-84AY258282.1 Oryza sativa (japonica cultivar-group) CR251 transcription factor gene, complete cds.
GenBankCP0126127e-84CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164576.12e-50ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ79e-33ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A453CPU91e-49A0A453CPU9_AEGTS; Uncharacterized protein
TrEMBLA0A453CPW44e-49A0A453CPW4_AEGTS; Uncharacterized protein
STRINGTraes_2AL_43491B9E0.11e-48(Triticum aestivum)
STRINGTraes_2BL_FC0F8A3DC.13e-49(Triticum aestivum)
STRINGTraes_2DL_A336122501.13e-50(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.11e-34ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]