PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2DL_B9444E406.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 126aa MW: 14480.3 Da PI: 10.6476

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2DL_B9444E406.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	106.5	3.4e-33	12	87	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+ev s ++++vg++ktLvfy+grap+g+kt+Wvmhe+rl Traes_2DL_B9444E406.1 12 TASEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDREVRSPaTRAVVGMRKTLVFYQGRAPNGSKTSWVMHEFRL 87 567************************************977788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	40.68	1	106	IPR003441	NAC domain
SuperFamily	SSF101941	8.5E-39	9	106	IPR003441	NAC domain
Pfam	PF02365	2.3E-16	15	87	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
MLWASEDVAK LTASEWYFFS FRDRKYATGS RTNRATKTGY WKATGKDREV RSPATRAVVG 60 MRKTLVFYQG RAPNGSKTSW VMHEFRLDSP HLPPREDWVL CRVFQKQKLD GEQDNARSSS 120 PPFAGS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-32	3	107	60	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-32	3	107	60	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-32	3	107	60	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-32	3	107	60	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-32	3	107	63	169	NAC domain-containing protein 19
3swm_B	1e-32	3	107	63	169	NAC domain-containing protein 19
3swm_C	1e-32	3	107	63	169	NAC domain-containing protein 19
3swm_D	1e-32	3	107	63	169	NAC domain-containing protein 19
3swp_A	1e-32	3	107	63	169	NAC domain-containing protein 19
3swp_B	1e-32	3	107	63	169	NAC domain-containing protein 19
3swp_C	1e-32	3	107	63	169	NAC domain-containing protein 19
3swp_D	1e-32	3	107	63	169	NAC domain-containing protein 19
4dul_A	1e-32	3	107	60	166	NAC domain-containing protein 19
4dul_B	1e-32	3	107	60	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK248480	1e-177	AK248480.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf7e16, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020168520.1	8e-85	protein CUP-SHAPED COTYLEDON 1-like
Swissprot	Q84TE6	4e-41	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	A0A453CI41	1e-88	A0A453CI41_AEGTS; Uncharacterized protein
STRING	Traes_2DL_B9444E406.1	1e-89	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP697	38	166

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	2e-57	NAC domain containing protein 74

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]