PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2DL_BB8506245.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Protein Properties

Length: 234aa MW: 25185.7 Da PI: 7.796

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2DL_BB8506245.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	41.8	1.9e-13	122	208	5	95
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sef 90 +s+v + ++v+p++ a +k+ +s tl + +grsWe+++ ++++ l++GW++F+ +n L+ gD +vF+l+ + ++ Traes_2DL_BB8506245.2 122 VCKSHVQQPFQVVVPRSLAPFLPSKP-TS--ATL-TWQGRSWEMRF--TGGRHIQRLEAGWRSFALDNALRLGDGCVFELVgCDgEGI 203 567999999999***996666554.33..443.3699***..88888889*********************994444444 PP ..EEE CS B3 91 elvvk 95 ++v+ Traes_2DL_BB8506245.2 204 VFRVQ 208 45555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	7.65E-16	115	212	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	8.7E-16	115	212	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.85E-14	116	211	No hit	No description
SMART	SM01019	6.6E-4	118	213	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.421	118	213	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.6E-10	121	200	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MLFFSIPSSS QILAMAEPIP ADSSTAVTPP VYRRRNSSEE SRGISSNLFG QGNLNPFCTT 60 FFDAGGKDHG VASSAGETSQ AAISAGPPDK LDPESAKACL EVEKTQPRIL PLLGKPYFAC 120 VVCKSHVQQP FQVVVPRSLA PFLPSKPTSA TLTWQGRSWE MRFTGGRHIQ RLEAGWRSFA 180 LDNALRLGDG CVFELVGCDG EGIVFRVQVL RAEIPASIRE RAGGYTPSSA IVLD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020147560.1	1e-153	B3 domain-containing protein Os04g0386900-like
Swissprot	Q7XLP4	7e-63	Y4869_ORYSJ; B3 domain-containing protein Os04g0386900
TrEMBL	A0A3B6DDM4	1e-171	A0A3B6DDM4_WHEAT; Uncharacterized protein
STRING	Traes_2DL_BB8506245.2	1e-171	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8954	35	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	6e-07	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]