PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_BF4319E7D.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 130aa    MW: 13698.2 Da    PI: 8.9124
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_BF4319E7D.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000112143123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           + C +C++ F+++  L  H++ H
  Traes_2DL_BF4319E7D.1 21 FACCYCPRKFRSSQALGGHQNAH 43
                           78******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.97E-52047No hitNo description
PROSITE profilePS5015710.0552148IPR007087Zinc finger, C2H2
PROSITE patternPS0002802343IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
LNLSLSLQRS PSSPPRFQAV FACCYCPRKF RSSQALGGHQ NAHKVQRNLA RRGRDATTAL  60
SLAAAGEQGK AAVDDDSAPL RLADPDAADA WGGGRVYPPH RQQGSGAASS GAARGNEELA  120
DEMIDLSLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0668267e-45BT066826.1 Zea mays full-length cDNA clone ZM_BFb0076P10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581274.26e-44uncharacterized protein LOC100830698
TrEMBLA0A3B6DEE03e-88A0A3B6DEE0_WHEAT; Uncharacterized protein
TrEMBLA0A453C2F03e-88A0A453C2F0_AEGTS; Uncharacterized protein
STRINGTraes_2DL_BF4319E7D.14e-89(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69922646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.11e-13zinc-finger protein 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]