PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_C8C8B8DA9.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 72aa    MW: 8054.27 Da    PI: 9.1162
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_C8C8B8DA9.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85.2e-084572128
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIa 28
                           +g W++eEd++l d + ++G  +W+t++
  Traes_2DL_C8C8B8DA9.1 45 KGLWSPEEDQKLRDFIVRYGHSCWSTVP 72
                           678***********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-93971IPR009057Homeodomain-like
PROSITE profilePS5129411.7944072IPR017930Myb domain
SuperFamilySSF466891.05E-64171IPR009057Homeodomain-like
PfamPF002497.2E-64571IPR001005SANT/Myb domain
CDDcd001675.31E-54871No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 72 aa     Download sequence    Send to blast
PPSLFLLGVL HSRKHCWSCA SAAAGISQES MGCKSCQKPK AQHRKGLWSP EEDQKLRDFI  60
VRYGHSCWST VP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3705137e-62AK370513.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2111O05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156817.11e-23transcription factor LAF1-like
TrEMBLA0A287IXA43e-23A0A287IXA4_HORVV; Uncharacterized protein
TrEMBLA0A287IXA91e-23A0A287IXA9_HORVV; Uncharacterized protein
TrEMBLA0A446L9M52e-23A0A446L9M5_TRITD; Uncharacterized protein
TrEMBLA0A453CFS41e-23A0A453CFS4_AEGTS; Uncharacterized protein
TrEMBLM7YW732e-23M7YW73_TRIUA; Transcription factor LAF1
STRINGTraes_2DL_C8C8B8DA9.17e-47(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111643041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.12e-15myb domain protein 19
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]