PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_CB69421CE.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 210aa    MW: 23506.3 Da    PI: 8.586
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_CB69421CE.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.6e-06154174426
                            ---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                            e Cr++++   C++ ++C+FaH+
  Traes_2DL_CB69421CE.2 154 EVCRDYLK-KMCNR-ESCRFAHP 174
                            89******.*****.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.836330IPR000571Zinc finger, CCCH-type
SMARTSM003560.21329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.7744573IPR000571Zinc finger, CCCH-type
SMARTSM003560.00854672IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.0015071IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.6175101IPR000571Zinc finger, CCCH-type
SMARTSM003569.675100IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.774150176IPR000571Zinc finger, CCCH-type
SMARTSM003560.0088151175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-4154175IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
SRDSKVTACA DSLRNNCFRG RTCRYYHPPP HIQESLLRSI GLDVPQVKTV CRDFARGRCS  60
RSANECRFLH HSSVQECAIV CQDFLRGRCE RIACRYTHVI AQPMLPPPMR DVPMQMPYPE  120
MVYMPPPPPP LGVPMMAPPL SPPRGFADNK NTVEVCRDYL KKMCNRESCR FAHPDSQTES  180
CAPRSAAAAA AAANPATAAK ELPRWLLCCC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3691860.0AK369186.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2086G01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165259.11e-130zinc finger CCCH domain-containing protein 28-like
SwissprotQ0JD072e-87C3H28_ORYSJ; Zinc finger CCCH domain-containing protein 28
TrEMBLA0A1D6RPF31e-152A0A1D6RPF3_WHEAT; Uncharacterized protein
STRINGTraes_2DL_CB69421CE.21e-152(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109041922
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]