PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_D8AD25F43.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Nin-like
Protein Properties Length: 177aa    MW: 20855.9 Da    PI: 8.32
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_D8AD25F43.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK85.45.1e-274392352
                 RWP-RK  3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
                           ++i+l+d+++yF+lpi++A+++L+++l++LK++CRqyGI+RWPhRk+ksl
  Traes_2DL_D8AD25F43.2 43 ASITLNDIAQYFHLPIREASRTLKIGLSILKKKCRQYGIPRWPHRKLKSL 92
                           689*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151919.36127115IPR003035RWP-RK domain
PfamPF020423.1E-224492IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MSEFHCCLSF CFLQNADSDL NLTDADLLAP AEKQRRAHRE YIASITLNDI AQYFHLPIRE  60
ASRTLKIGLS ILKKKCRQYG IPRWPHRKLK SLDSLIHDLE YVIDDETERD GVKQEDHMQD  120
EKENQDAIEA LAKRKRMLET EKATIQQKPT LDLMAETKQF RQYVFKRKYR AKTLVSE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3738350.0AK373835.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3045A19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158589.11e-105protein RKD5-like
TrEMBLA0A453CMI21e-128A0A453CMI2_AEGTS; Uncharacterized protein
STRINGTraes_2DL_D8AD25F43.21e-129(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.12e-38RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]