PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_DF7B995C9.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 205aa    MW: 23087.6 Da    PI: 10.8399
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_DF7B995C9.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.29.4e-5531281128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrFhPtdeel+++yL+kkv++ ++ +  +++ +d++k+ePwdLp+ ++ +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgk
  Traes_2DL_DF7B995C9.2   3 LPPGFRFHPTDEELITHYLAKKVADARFAA-LAVSVADLNKCEPWDLPSLARMGEKEWYFFCLKDRKYPTGLRTNRATESGYWKATGK 89 
                            79*************************999.569999***********8778899********************************* PP

                    NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            dk++++ +++lvg+kktLvfy+grapkg k+ Wvmheyrl
  Traes_2DL_DF7B995C9.2  90 DKDIFR-GKALVGMKKTLVFYTGRAPKGDKSGWVMHEYRL 128
                            ******.99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.02E-592133IPR003441NAC domain
PROSITE profilePS5100552.5093149IPR003441NAC domain
PfamPF023652.3E-304128IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MDLPPGFRFH PTDEELITHY LAKKVADARF AALAVSVADL NKCEPWDLPS LARMGEKEWY  60
FFCLKDRKYP TGLRTNRATE SGYWKATGKD KDIFRGKALV GMKKTLVFYT GRAPKGDKSG  120
WVMHEYRLNA KLHAASTKRV GAVQGVQEEP CRRRSVVGAG VVSSKEKRRG DDRGDRVVRG  180
RRHPAPCAPG HVRLRRLLRP GGARD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-49112815142NO APICAL MERISTEM PROTEIN
1ut4_B4e-49112815142NO APICAL MERISTEM PROTEIN
1ut7_A4e-49112815142NO APICAL MERISTEM PROTEIN
1ut7_B4e-49112815142NO APICAL MERISTEM PROTEIN
3swm_A4e-49112818145NAC domain-containing protein 19
3swm_B4e-49112818145NAC domain-containing protein 19
3swm_C4e-49112818145NAC domain-containing protein 19
3swm_D4e-49112818145NAC domain-containing protein 19
3swp_A4e-49112818145NAC domain-containing protein 19
3swp_B4e-49112818145NAC domain-containing protein 19
3swp_C4e-49112818145NAC domain-containing protein 19
3swp_D4e-49112818145NAC domain-containing protein 19
4dul_A4e-49112815142NAC domain-containing protein 19
4dul_B4e-49112815142NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0931111e-160FP093111.1 Phyllostachys edulis cDNA clone: bphyem126o09, full insert sequence.
GenBankFP0977531e-160FP097753.1 Phyllostachys edulis cDNA clone: bphyem208n21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168413.12e-98NAC domain-containing protein 92-like
SwissprotQ9FLJ23e-76NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A453C5441e-147A0A453C544_AEGTS; Uncharacterized protein
STRINGTraes_2DL_DF7B995C9.21e-149(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27303787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.14e-78NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]