PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_EEF2E71FA.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 379aa    MW: 41043.9 Da    PI: 6.4407
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_EEF2E71FA.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.5e-19297331135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  Traes_2DL_EEF2E71FA.1 297 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 331
                            *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.47E-14290352No hitNo description
SMARTSM004012.3E-18291345IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.466291327IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.7E-15295329IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.95E-15296353No hitNo description
PROSITE patternPS003440297322IPR000679Zinc finger, GATA-type
PfamPF003202.6E-17297331IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MPSYAHHHSS LDERMDALKG SSREEETPDE AAAEAPAAWG FAERDGFSVE DLLDLEEFCE  60
PDRDGADEPE EAPAAAVKEE KLNDGPNQSV VSYELAPPAP PAPEIVDLPA HDVEEELEWV  120
SRIMDDSLSE LPPQPAPPAS MMASLAPRPP QHRLPQRHPQ DGAYRALPSM SDPMRTPTIC  180
ALSTEALVPV KAKRSKRSRA SGWSLSGPAP DSTSSSSTTT TSSCSSSASF SPYFLLDTPH  240
FGASELMEEY NILPPPPKKS KHGKSSKQKA KKRGRKPKNL PAPSSAMEAA TQSDRRCSHC  300
GVQKTPQWRA GPEGAKTLCN ACGVRYKSGR LLPEYRPACS PTYVSSVHSN SHRKVLEMRR  360
KKEDGPLTVT ATAPAVASF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3588220.0AK358822.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1083M14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168016.10.0GATA transcription factor 5-like
TrEMBLA0A1D5UHP30.0A0A1D5UHP3_WHEAT; Uncharacterized protein
TrEMBLA0A453CJ840.0A0A453CJ84_AEGTS; Uncharacterized protein
STRINGTraes_2DL_EEF2E71FA.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.25e-40GATA transcription factor 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]