PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_F37E51175.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 50aa    MW: 6101.85 Da    PI: 8.206
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_F37E51175.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR134.66.1e-111049140
                   FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegk 40
                           +fYn+Y+ e GFsvr+s+ +  + n +i+ r+fvCs+eg 
  Traes_2DL_F37E51175.1 10 RFYNKYGLEKGFSVRRSYVEWDESNCHIILRKFVCSREGV 49
                           6*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-81049IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 50 aa     Download sequence    Send to blast
MFNSEDEGYR FYNKYGLEKG FSVRRSYVEW DESNCHIILR KFVCSREGVR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703068e-64HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188064.11e-26protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A453E7V52e-24A0A453E7V5_AEGTS; Uncharacterized protein
STRINGTraes_2DL_F37E51175.13e-29(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2449976
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]