PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2DS_0F2500A60.1

Common Name

WRKY72-b

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

WRKY

Protein Properties

Length: 191aa MW: 21078.9 Da PI: 9.3424

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2DS_0F2500A60.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.6	2.6e-33	98	156	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg+H+h+ Traes_2DS_0F2500A60.1 98 LDDGYRWRKYGQKAVKNNNFPRSYYRCTHQGCNVKKQVQRLSRDEGVVVTTYEGTHTHP 156 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.2E-35	83	156	IPR003657	WRKY domain
SuperFamily	SSF118290	5.23E-30	90	157	IPR003657	WRKY domain
PROSITE profile	PS50811	30.113	93	158	IPR003657	WRKY domain
SMART	SM00774	1.1E-39	98	157	IPR003657	WRKY domain
Pfam	PF03106	2.7E-27	99	156	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
TSNSYHFVAG ASSHDHLHHH GQAAGNNSSG GGGLNQGLFP GAKQEEPSNS KDGGGDDGAG 60 SSSQGVGEAD VVVGRKKGEK RERRPRFAFQ TRSQVDILDD GYRWRKYGQK AVKNNNFPRS 120 YYRCTHQGCN VKKQVQRLSR DEGVVVTTYE GTHTHPIEKS NDNFEHILTQ MQVYSGINNV 180 SQTFGNQHMF Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-27	89	157	8	76	Probable WRKY transcription factor 4
2lex_A	2e-27	89	157	8	76	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF368363	0.0	EF368363.1 Triticum aestivum WRKY transcription factor (WRKY72-b) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020165705.1	1e-141	probable WRKY transcription factor 75
TrEMBL	A0A453A8A0	1e-140	A0A453A8A0_AEGTS; Uncharacterized protein
STRING	EMT21213	1e-140	(Aegilops tauschii)
STRING	Traes_2DS_0F2500A60.1	1e-140	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1100	38	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	4e-56	WRKY DNA-binding protein 75