PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DS_119508A0E.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CAMTA
Protein Properties Length: 121aa    MW: 14085.3 Da    PI: 10.2476
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DS_119508A0E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1105.63.3e-332295476
                   CG-1  4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvg 76
                           e  +rw +++ei+a+L+n+e++++++++ ++p sg+++Ly+rk+vr+frkDG++wkkkkdgktv+E+hekLK  
  Traes_2DS_119508A0E.1 22 EaASRWFRPNEIYAVLANHERFKVHAQPIDKPVSGTIVLYDRKVVRNFRKDGHNWKKKKDGKTVQEAHEKLKAR 95
                           5589********************************************************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143743.88416121IPR005559CG-1 DNA-binding domain
SMARTSM010761.8E-2119117IPR005559CG-1 DNA-binding domain
PfamPF038598.4E-272395IPR005559CG-1 DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
WDLVECSVCV VTDLNFEKLK AEAASRWFRP NEIYAVLANH ERFKVHAQPI DKPVSGTIVL  60
YDRKVVRNFR KDGHNWKKKK DGKTVQEAHE KLKARLSTTS TMKKNSNFIA VVTFMHPHLY  120
C
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro. Binds to the DNA consensus sequence 5'-T[AC]CG[CT]GT[GT][GT][GT][GT]T[GT]CG-3'. {ECO:0000269|PubMed:16192280}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3754471e-121AK375447.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3094H17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186933.14e-49calmodulin-binding transcription activator 5
SwissprotQ7XHR24e-47CBT_ORYSJ; Calmodulin-binding transcription activator CBT
TrEMBLA0A446KWX01e-51A0A446KWX0_TRITD; Uncharacterized protein
TrEMBLA0A453BHH91e-51A0A453BHH9_AEGTS; Uncharacterized protein
STRINGTraes_2DS_119508A0E.12e-86(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1983834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16940.11e-31calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]