PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2DS_20F748657.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HD-ZIP

Protein Properties

Length: 238aa MW: 25755.7 Da PI: 7.2682

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2DS_20F748657.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.7	9.9e-19	60	113	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le F+++r++ + ++ +LA++lgL+ +qV vWFqNrRa++k Traes_2DS_20F748657.2 60 KKRRLTDEQVHGLELSFREERKLETGRKVHLAAELGLDPKQVAVWFQNRRARHK 113 45689***********************************************99 PP
2	HD-ZIP_I/II	115.2	3.8e-37	60	149	2	91
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 kkrrl++eqv+ LE sF+ee+kLe+ rKv+la eLgl+p+qvavWFqnrRAR+k+k +E+++++Lk+a+da + ++++Le+ev +L+e Traes_2DS_20F748657.2 60 KKRRLTDEQVHGLELSFREERKLETGRKVHLAAELGLDPKQVAVWFQNRRARHKSKLMEEEFAKLKHAHDAAVLHKCHLENEVLRLKE 147 9**************************************************************************************9 PP HD-ZIP_I/II 90 el 91 +l Traes_2DS_20F748657.2 148 RL 149 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.68E-17	53	114	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.001	55	115	IPR001356	Homeobox domain
SMART	SM00389	2.8E-17	58	119	IPR001356	Homeobox domain
Pfam	PF00046	5.3E-16	60	113	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.5E-18	60	113	IPR009057	Homeodomain-like
CDD	cd00086	1.31E-15	60	115	No hit	No description
PRINTS	PR00031	1.2E-5	86	95	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	90	113	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.2E-5	95	111	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MDKQQVFGSS YVDMPFFAAN GAATAQGESR PRARRRRRRA ARCGGGDGDG GEMDGGGDPK 60 KRRLTDEQVH GLELSFREER KLETGRKVHL AAELGLDPKQ VAVWFQNRRA RHKSKLMEEE 120 FAKLKHAHDA AVLHKCHLEN EVLRLKERLG ATEEEVRRLR SAPGSHGASG DGGDAAGAVG 180 ACGGSPSSSF STGTCQQHPG FSGADVLGPD DDLMMCVPEY GGYADSSVVE WFSLYGLI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	29	38	RPRARRRRRR
2	33	41	RRRRRRAAR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB490234	0.0	AB490234.1 Hordeum vulgare subsp. vulgare HvHox2 mRNA for homeodomain leucine zipper protein class 1, complete cds.
GenBank	AK368464	0.0	AK368464.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2074A10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020155462.1	1e-174	homeobox-leucine zipper protein HOX14-like
Swissprot	Q7XI85	1e-91	HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14
TrEMBL	A0A453B7N7	1e-173	A0A453B7N7_AEGTS; Uncharacterized protein
TrEMBL	W5C3L7	1e-173	W5C3L7_WHEAT; Uncharacterized protein
STRING	Traes_2DS_20F748657.2	1e-174	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2006	38	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	1e-38	homeobox protein 40

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]