PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DS_524E9B6A3.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family E2F/DP
Protein Properties Length: 336aa    MW: 37372.7 Da    PI: 4.697
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DS_524E9B6A3.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP79.23.8e-2555120171
                E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                            r+++sL+llt+kf++ll+ +e+g+++ln++ + L   +v  ++RRiYDi+NVLe+++liek  kn irwkg
  Traes_2DS_524E9B6A3.1  55 RYDSSLGLLTKKFINLLKGAEDGTLDLNKAVEIL---EV--QKRRIYDITNVLEGVDLIEKGLKNTIRWKG 120
                            6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.1E-2752121IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.14E-1555118IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.0E-3155120IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.4E-2357120IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146601.14E-31132244No hitNo description
SuperFamilySSF1440741.88E-20134243No hitNo description
PfamPF164213.8E-24136241IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
ENEQKIEIEN AQSEVGKGEI SQGHHKESTT GPTKGIKRAR KPHGSIEGDA ANNCRYDSSL  60
GLLTKKFINL LKGAEDGTLD LNKAVEILEV QKRRIYDITN VLEGVDLIEK GLKNTIRWKG  120
FDMLLPKEVE LQTSALKEEL DSSHDEECRL DEEIREAQEK LLALKLNKDK KKWLYLSKED  180
ICEIPHLQGS TRIAIHAPHG TCVEVPDPNA DMDICKDLES QEKHYQLLLR SSMGPIDCYL  240
ISDHQGVSDP EQVAQDNLDH ASTAGGSDAP RPVDDHPSQA PEKGEGDTVG KHTSEPSSTH  300
ERMPGILKIV LPDTDRDADY WLASDVDATM TETWAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A3e-2054120673PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147413.10.0transcription factor E2FC-like
TrEMBLA0A1D5UX810.0A0A1D5UX81_WHEAT; Uncharacterized protein
STRINGTraes_2DS_524E9B6A3.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.31e-70E2F transcription factor 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]