PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DS_5DF921ABB.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 399aa    MW: 42893.1 Da    PI: 8.1238
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DS_5DF921ABB.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.56.2e-54311591128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+
  Traes_2DS_5DF921ABB.1  31 LPPGFRFHPTDEELVVHYLKKKAAKVPLPV-TIIAEVDLYKFDPWELPEKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGT 117
                            79****************************.89***************988899********************************** PP

                    NAM  89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            dk+++++  ++e+vg+kk Lvfy+g+ pkg kt+W+mheyrl
  Traes_2DS_5DF921ABB.1 118 DKPIMASgcGREKVGVKKALVFYRGKPPKGLKTNWIMHEYRL 159
                            ******9999999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-6428196IPR003441NAC domain
PROSITE profilePS5100561.70931196IPR003441NAC domain
PfamPF023659.6E-2832159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MRSMGSSDSS SGSAPPRHQP PPPQQGSAPE LPPGFRFHPT DEELVVHYLK KKAAKVPLPV  60
TIIAEVDLYK FDPWELPEKA TFGEQEWYFF SPRDRKYPNG ARPNRAATSG YWKATGTDKP  120
IMASGCGREK VGVKKALVFY RGKPPKGLKT NWIMHEYRLT DASSSATTSR PPPVTGGSRA  180
ASLRLDDWVL CRIYKKINKA AAGDQQRSME CEDSVEDAVT AYPPYATAGM TGAGAHGSNY  240
DSLLHHQDSH EDNFLDGLLT AEDAGLSAGA TSLSHLAAAA RASPAPTKQF LAPSSSTPFN  300
WLDASTVGIL PQARNFPGFN RSRNVGNMSL SSTADMAVDN GGGNAINAMP PFMNHLPVQD  360
GTYHQQHVIL GAPLAPEATA AATSAFQHPV QISGVNWNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-733120017169NO APICAL MERISTEM PROTEIN
1ut4_B2e-733120017169NO APICAL MERISTEM PROTEIN
1ut7_A2e-733120017169NO APICAL MERISTEM PROTEIN
1ut7_B2e-733120017169NO APICAL MERISTEM PROTEIN
3swm_A3e-733120020172NAC domain-containing protein 19
3swm_B3e-733120020172NAC domain-containing protein 19
3swm_C3e-733120020172NAC domain-containing protein 19
3swm_D3e-733120020172NAC domain-containing protein 19
3swp_A3e-733120020172NAC domain-containing protein 19
3swp_B3e-733120020172NAC domain-containing protein 19
3swp_C3e-733120020172NAC domain-containing protein 19
3swp_D3e-733120020172NAC domain-containing protein 19
4dul_A2e-733120017169NAC domain-containing protein 19
4dul_B2e-733120017169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269|PubMed:17124321, ECO:0000269|PubMed:22278768}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00058PBMTransfer from AT1G61110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8208900.0KM820890.1 Triticum aestivum cultivar Chinese Spring NAC transcription factor NAM-D2 (NAM-D2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200235.10.0NAC transcription factor NAM-B2
SwissprotA0SPJ60.0NAMB2_TRITD; NAC transcription factor NAM-B2
TrEMBLA0A3B6DB860.0A0A3B6DB86_WHEAT; Uncharacterized protein
TrEMBLA0A453B9J00.0A0A453B9J0_AEGTS; Uncharacterized protein
STRINGTraes_2DS_5DF921ABB.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75723649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.14e-93NAC domain containing protein 25
Publications ? help Back to Top
  1. Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J
    A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat.
    Science, 2006. 314(5803): p. 1298-301
    [PMID:17124321]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]