PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DS_7B6E75DD2.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 79aa    MW: 8596.99 Da    PI: 4.8106
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DS_7B6E75DD2.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS28.22.4e-091879186241
                   GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsles......erdevLklvkslsPkvvvv 241
                            +++l++++L  +  Eal+Vn+++ lh+++de++ + s       r+ +Lk +++l P++vvv
  Traes_2DS_7B6E75DD2.1  18 VDQLRVQQLVSDGTEALIVNCHMLLHSVPDETAGSVSltqsvsLRTMLLKSIRTLDPTLVVV 79 
                            6889999999999****************9987666655466678899************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509859.624179IPR005202Transcription factor GRAS
PfamPF035148.2E-71879IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MDFRMVPTSP ADAFTSLVDQ LRVQQLVSDG TEALIVNCHM LLHSVPDETA GSVSLTQSVS  60
LRTMLLKSIR TLDPTLVVV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3627401e-108AK362740.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2009M24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165039.13e-46scarecrow-like protein 32
TrEMBLA0A1D5UV258e-45A0A1D5UV25_WHEAT; Uncharacterized protein
TrEMBLA0A453B6G18e-45A0A453B6G1_AEGTS; Uncharacterized protein
STRINGTraes_2DS_7B6E75DD2.14e-49(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56973759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-14GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]