PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2DS_8EA143F67.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

G2-like

Protein Properties

Length: 208aa MW: 22834.1 Da PI: 10.8612

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2DS_8EA143F67.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102	3.9e-32	38	92	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLHerF +av++LGG++kAtPk+i+++m+++gLtl+h+kSHLQk+Rl Traes_2DS_8EA143F67.1 38 KPRLKWTPELHERFADAVKKLGGPDKATPKAIMRVMGIPGLTLYHLKSHLQKFRL 92 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.742	35	95	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.7E-30	36	93	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.22E-16	37	93	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.4E-24	38	93	IPR006447	Myb domain, plants
Pfam	PF00249	5.0E-10	40	90	IPR001005	SANT/Myb domain
Pfam	PF14379	1.4E-24	139	185	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MSSRPSLSPE NKFFMKGQGG AGAGGGGDAG LILSTDAKPR LKWTPELHER FADAVKKLGG 60 PDKATPKAIM RVMGIPGLTL YHLKSHLQKF RLSKNLQAQA NAVHAKNVYG FGTATDKACE 120 GRGSPADHLN RETNTSRSMH INDALQMQIE VQRRLHEQIE VQRHLQLRIE AQGKYLHSVL 180 EKAQEALGKQ HVSSPASKRR SPRSGCRS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-20	38	94	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-20	38	94	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-20	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-20	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-20	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-20	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-20	38	94	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-20	38	94	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-20	38	94	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-20	38	94	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-20	38	94	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-20	38	94	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK362598	0.0	AK362598.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2008K07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020161185.1	1e-139	myb-related protein 1-like
Swissprot	Q9FK47	1e-72	PHLA_ARATH; Myb-related protein 1
TrEMBL	A0A1D5UXP7	1e-138	A0A1D5UXP7_WHEAT; Uncharacterized protein
STRING	Traes_2DS_8EA143F67.1	1e-153	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3574	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.4	2e-69	myb-related protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]