PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DS_9A08AAEE4.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 119aa    MW: 12498.4 Da    PI: 7.5107
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DS_9A08AAEE4.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS41.71.9e-1366119255
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar 55 
                            ++lL++cA+a++++d++l+q++L+ l+++a  dgd++qRl+a f+ AL ar +r
  Traes_2DS_9A08AAEE4.1  66 EQLLVHCANAIEANDATLTQQILWVLNNIAPADGDSNQRLTAAFLCALVARASR 119
                            79***********************************************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098510.62539119IPR005202Transcription factor GRAS
PfamPF035146.5E-1166119IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MMQFTHAAVT APPLYPNGHH GLGLGLFLDV GAPRARPWPA AGSLFPTLPP SSKISLGNLN  60
SAGCMEQLLV HCANAIEAND ATLTQQILWV LNNIAPADGD SNQRLTAAFL CALVARASR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3627401e-169AK362740.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2009M24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165039.11e-79scarecrow-like protein 32
SwissprotQ9SN222e-22SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A1D5UV252e-78A0A1D5UV25_WHEAT; Uncharacterized protein
TrEMBLA0A3B6AUR22e-78A0A3B6AUR2_WHEAT; Uncharacterized protein
TrEMBLA0A446KTE62e-78A0A446KTE6_TRITD; Uncharacterized protein
TrEMBLA0A453B6G12e-78A0A453B6G1_AEGTS; Uncharacterized protein
STRINGTraes_2BS_FDABA21A7.15e-78(Triticum aestivum)
STRINGTraes_2DS_9A08AAEE4.11e-81(Triticum aestivum)
STRINGTRIUR3_31604-P19e-79(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56973759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-24GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]