PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DS_D2EF60FE1.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 191aa    MW: 20978.2 Da    PI: 11.6749
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DS_D2EF60FE1.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.66.5e-1381114340
                    AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtae 40 
                            y+G+r+++ +g+W+AeIrdp +    +r++lg+f tae
  Traes_2DS_D2EF60FE1.1  81 YRGIRRRP-WGKWAAEIRDPAK---GARVWLGTFATAE 114
                            9*******.**********843...4**********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.09480114IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-1280114IPR016177DNA-binding domain
SMARTSM003805.7E-1080130IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-1880114IPR001471AP2/ERF domain
PRINTSPR003677.7E-98192IPR001471AP2/ERF domain
CDDcd000181.45E-1581114No hitNo description
PfamPF008472.4E-781114IPR001471AP2/ERF domain
PRINTSPR003677.7E-9103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MCGGAIISDF TPERDHRGGS KRSLCTADFW PHAAAXAFDD PTGHHDFYPA DLTGACSFPP  60
QHQAAAAGEE PSRKRERKTM YRGIRRRPWG KWAAEIRDPA KGARVWLGTF ATAEXXXXXX  120
XXXPPHPRDQ GQGQLPQRGP AARPGRLRRR QRRRLLPPAV VHGRCRRAGD GGGVRAPAAP  180
AGRARDGALE L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17387KRERKTMYRGIRRRP
2148153RRQRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9767008e-52EU976700.1 Zea mays clone 987910 ERF-like protein mRNA, complete cds.
GenBankEU9768708e-52EU976870.1 Zea mays clone 992413 mRNA sequence.
GenBankKJ7283488e-52KJ728348.1 Zea mays clone pUT6630 AP2-EREBP transcription factor (EREB200) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195438.15e-76ethylene-responsive transcription factor ERF071-like isoform X1
TrEMBLA0A3B6D7D61e-74A0A3B6D7D6_WHEAT; Uncharacterized protein
TrEMBLA0A453APX31e-74A0A453APX3_AEGTS; Uncharacterized protein
STRINGTraes_2DS_D2EF60FE1.11e-123(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115852836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.15e-30ethylene-responsive element binding protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]