PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DS_DADB69BC9.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HRT-like
Protein Properties Length: 428aa    MW: 46532.7 Da    PI: 9.8025
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DS_DADB69BC9.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like566.6e-18182212131
               HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                            +CGv+ledGs C + P +gRKRCe HKG+R+
  Traes_2DS_DADB69BC9.1 182 VCGVTLEDGSSCLEDPLEGRKRCELHKGRRV 212
                            7*****************************7 PP
2HRT-like30.56e-10343369128
               HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKG 28 
                            iCGv +++G  Ck  Pv gR RCeeH G
  Traes_2DS_DADB69BC9.1 343 ICGVVTDNG-YCKLAPVTGRERCEEHRG 369
                            8*******9.6***************98 PP
3HRT-like51.41.8e-16389418130
               HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                            iCG++ +dGs+Ck+qP+ gRKRC  HKG+R
  Traes_2DS_DADB69BC9.1 389 ICGARASDGSPCKNQPIAGRKRCGLHKGQR 418
                            8****************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MNALTAGPGL FREVFSRGYS VMFRCALMCS KKAAEKTEAQ LLGVFDYAWN KLQNGVCRRE  60
EILLKLEQGS HRLSLLGRVR HLKQRVFGEK AGIKINSSGS VEISSGSMKN MLPRVRAFVG  120
FRPHLVNSGG DLNEATDIHR KCTSQANTAG NKQAHRRSEG YKVKKIDVIK RRTAPIREAE  180
AVCGVTLEDG SSCLEDPLEG RKRCELHKGR RVRVAYGRKV SSSSSTCQVA IPTVESIPQQ  240
TANPSKPDQA WQTSADQSKN LSTNAKEPSR QRNGFEAKEM KIGEAPAEDE AYGASHAESQ  300
FHQDEPVGRK WFELLKAQKS ASAPSSRGQG CQTREANDDA SAICGVVTDN GYCKLAPVTG  360
RERCEEHRGI EVTGASSAPC SGRLGWPSIC GARASDGSPC KNQPIAGRKR CGLHKGQRAC  420
CASTPSVK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2520400.0AK252040.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf148d05, mRNA sequence.
GenBankAK3627340.0AK362734.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2009M06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159698.10.0protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBLA0A3B6DAI00.0A0A3B6DAI0_WHEAT; Uncharacterized protein
STRINGTraes_2DS_DADB69BC9.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79483443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.12e-24effector of transcription2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]