PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2DS_DE2E9E2D5.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LBD

Protein Properties

Length: 159aa MW: 16850.3 Da PI: 11.7848

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2DS_DE2E9E2D5.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	34.1	7.7e-11	27	70	54	97
DUF260 54 redamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +++++sl+yeA r+ +Pv+Gavg++++++++l++++++++l+ Traes_2DS_DE2E9E2D5.2 27 PRAVFQSLLYEAAGRTINPVSGAVGLLWAGSWHLCEAAVQTVLR 70 57899********************************9998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	3.1E-7	27	68	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
RHPLRRQVLR PRRPHVLPHR CPRAAAPRAV FQSLLYEAAG RTINPVSGAV GLLWAGSWHL 60 CEAAVQTVLR GGAIRPLPEL AGGVPEGGVG GSDLFVSSSR RAVVGCSTYS AAKRVTPRKT 120 WAPEAASHHQ EPSCDLGLFL TPGSAAAAEG ERRARRAGT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK363859	0.0	AK363859.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2019I02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020191646.1	5e-87	LOB domain-containing protein 37-like
TrEMBL	R7WEM1	6e-86	R7WEM1_AEGTA; Uncharacterized protein
STRING	Traes_2DS_DE2E9E2D5.2	1e-108	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4084	36	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	2e-21	LOB domain-containing protein 37

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]