PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DS_EEE59C2E7.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 82aa    MW: 9696.25 Da    PI: 10.8022
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DS_EEE59C2E7.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94e-172063146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                           rg ++++E+  ++d+++ lG++ W+ Ia++++ gRt++++k++w++
  Traes_2DS_EEE59C2E7.1 20 RGTFSEQEERTILDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 63
                           899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.74E-22173IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-11125IPR009057Homeodomain-like
PROSITE profilePS500904.519114IPR017877Myb-like domain
PROSITE profilePS5129425.3381569IPR017930Myb domain
SMARTSM007172.1E-151967IPR001005SANT/Myb domain
PfamPF002496.7E-162063IPR001005SANT/Myb domain
CDDcd001671.92E-102262No hitNo description
Gene3DG3DSA:1.10.10.601.5E-202669IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
RCGKSCRLRW INYLRPDLKR GTFSEQEERT ILDVHRILGN RWAQIAKHLP GRTDNEVKNF  60
WNSCIKKKLI AQGLDPKTHN LL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2616940108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040065e-51AP004006.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1197_D06.
GenBankAP0042595e-51AP004259.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0005E02.
GenBankAP0149635e-51AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126155e-51CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645809.17e-58myb-related protein Hv33
RefseqXP_015695089.14e-58PREDICTED: myb-related protein Hv33-like
SwissprotP200275e-45MYB3_HORVU; Myb-related protein Hv33
TrEMBLA0A0D3GR972e-56A0A0D3GR97_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0EBK42e-56A0A0E0EBK4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0LKX61e-56A0A0E0LKX6_ORYPU; Uncharacterized protein
TrEMBLA0A0E0Q8L42e-56A0A0E0Q8L4_ORYRU; Uncharacterized protein
TrEMBLA0A1E5WB831e-56A0A1E5WB83_9POAL; Transcription factor MYB86
TrEMBLA2YLJ62e-56A2YLJ6_ORYSI; Uncharacterized protein
TrEMBLI1QAV02e-56I1QAV0_ORYGL; Uncharacterized protein
TrEMBLQ7F0R02e-56Q7F0R0_ORYSJ; Os07g0497500 protein
STRINGPavir.Ba00923.1.p1e-57(Panicum virgatum)
STRINGOMERI07G12000.13e-57(Oryza meridionalis)
STRINGORUFI07G15620.13e-57(Oryza rufipogon)
STRINGOS07T0497500-003e-57(Oryza sativa)
STRINGOPUNC07G13970.12e-57(Oryza punctata)
STRINGORGLA07G0124200.13e-57(Oryza glaberrima)
STRINGOBART07G15150.13e-57(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97513545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.12e-52myb domain protein 67