PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DS_FB1D2D1A7.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 57aa    MW: 6251.06 Da    PI: 5.597
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DS_FB1D2D1A7.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS36.85.7e-12154319373
                   GRAS 319 leeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                            ++ aGF++v+++e+aa +++++l++++  g+ ++ e++ l+l+Wk++++v++SaW
  Traes_2DS_FB1D2D1A7.1   1 MRGAGFRAVAFGEEAAGEIRTMLNEHA-AGWGMKREDDDLMLTWKGHNVVFASAW 54 
                            788************************.889999********************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035142.0E-9154IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 57 aa     Download sequence    Send to blast
MRGAGFRAVA FGEEAAGEIR TMLNEHAAGW GMKREDDDLM LTWKGHNVVF ASAWAPS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3627401e-75AK362740.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2009M24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165039.11e-32scarecrow-like protein 32
SwissprotQ9SN226e-18SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A3B6C3303e-31A0A3B6C330_WHEAT; Uncharacterized protein
TrEMBLA0A446KTH26e-32A0A446KTH2_TRITD; Uncharacterized protein
TrEMBLA0A446M2X23e-31A0A446M2X2_TRITD; Uncharacterized protein
TrEMBLA0A446M3346e-32A0A446M334_TRITD; Uncharacterized protein
TrEMBLM8AQZ06e-32M8AQZ0_TRIUA; Uncharacterized protein
STRINGTraes_2BS_FDABA21A7.14e-32(Triticum aestivum)
STRINGTraes_2DS_FB1D2D1A7.13e-34(Triticum aestivum)
STRINGTRIUR3_31604-P11e-32(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56973759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.13e-20GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]