PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_00FAACD5D.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 518aa    MW: 56644.8 Da    PI: 6.154
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_00FAACD5D.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.41.3e-06278299223
                            EETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                             C +Cgk F+r  nL+ H+r H
  Traes_3AL_00FAACD5D.1 278 FCVICGKGFKRDANLRMHMRGH 299
                            6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.68E-5275302No hitNo description
SMARTSM003550.015277299IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.614277304IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.1E-5278303IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280279299IPR007087Zinc finger, C2H2
SMARTSM0035568326359IPR015880Zinc finger, C2H2-like
SMARTSM0035522364386IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MRKSSEISMK ASSSMASDAS GNTDPGQQGA RFSSMDQSCF ARPGQSIPGY PPFFGPQSSN  60
FYLPDDSVAK ACDPFEPNPP QNNPVADWDP QAMLSNLTFL EQKIKQVKDI VQSMGNRGSQ  120
DVGGSCELAA KQQLVTADLT SIIIQLISTA GSMLPSMKTP LLSSNPAVRQ LNTPGSPMGF  180
GSIVNQRPST VREEMVPDIT KTPDYEDLMN TLNPAHDEKD DLIKCPNPCV GEGPEPVPME  240
DHDVKESDDG GEAEHLPPGS YVVLQLEKEE ILAPHTHFCV ICGKGFKRDA NLRMHMRGHG  300
DEYKTPAALA KPMRDSVSDP TPVTRYSCPY VGCKRNKEHR KFQPLKTILC VKNHYKRSHC  360
DKRYTCSRCN TKKFSVIADL KTHEKHCGRD KWLCSCGTTF SRKDKLFGHV ALFQGHTPAL  420
PMDDIKATGA SEQRSEAMDD MVGSTGYNFP GSTSDGIPNL DMKVADDTRG YFSPLNFDPC  480
FGALDDFARP GFDISENPFS FLPSGPGSCS FGQLSGDS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0347930.0KF034793.1 Triticum aestivum isolate A cultivar Barbela 7/72/92 STOP1 gene, complete cds.
GenBankKF0347960.0KF034796.1 Triticum aestivum isolate A cultivar Anahuac STOP1 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166559.10.0zinc finger protein STOP1 homolog
SwissprotQ943I60.0STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A3B6EMX50.0A0A3B6EMX5_WHEAT; Uncharacterized protein
STRINGTraes_3AL_00FAACD5D.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-154C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]