PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_2297D6E18.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 265aa    MW: 29481.2 Da    PI: 5.9408
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_2297D6E18.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY696.8e-2268128359
                            -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
                   WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                            Dg+ WrKYGqK++k+s fpr YYrC+++   +C + k v+++ +edp ++++tY+ eH+++
  Traes_3AL_2297D6E18.1  68 DGHLWRKYGQKNIKDSVFPRLYYRCSYRedkQCLASKLVQQEnHEDPPLFKVTYTYEHTCN 128
                            9**************************99999*******9752689*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.6E-2255128IPR003657WRKY domain
SuperFamilySSF1182901.96E-2159129IPR003657WRKY domain
SMARTSM007746.2E-3266129IPR003657WRKY domain
PfamPF031063.5E-2368127IPR003657WRKY domain
PROSITE profilePS5081116.08868130IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MASPPPKGES FDFEDPRAQE AMGSASASYS APGGVFGLSP PESSRRDSRK RRKDRPSWVK  60
HTFTPHFDGH LWRKYGQKNI KDSVFPRLYY RCSYREDKQC LASKLVQQEN HEDPPLFKVT  120
YTYEHTCNTA PVPTPDVVAE LPAPATGDAL FLRFDSTGAG HRDAHRMEQE RHYQQPAAPG  180
WPSMMLSFDS NSQQHEQCTF PSELPPAASS SSFSTEGLPA PPSTTDGGGD GFSTWDSLRY  240
GLNDHVHFGD NSYLPNSGND GDDNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-13681271068OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14853RKRRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186009.11e-169probable WRKY transcription factor 46
TrEMBLA0A3B6EMU10.0A0A3B6EMU1_WHEAT; Uncharacterized protein
TrEMBLA0A446NTM30.0A0A446NTM3_TRITD; Uncharacterized protein
STRINGTraes_3AL_2297D6E18.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115292433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-17WRKY DNA-binding protein 46
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]