PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_3AL_2A3EA5AD5.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 109aa MW: 12932.1 Da PI: 8.9641

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3AL_2A3EA5AD5.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.2	2.1e-11	36	62	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C f++rt tCky ++CkF H++ Traes_3AL_2A3EA5AD5.1 36 PGEKECAFYMRTRTCKYEETCKFDHPQ 62 57899********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.127	35	63	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.97E-6	35	62	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.3E-9	37	62	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.8E-4	41	61	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 109 aa Download sequence Send to blast
MGSHSTIGQS DAFYSPNTMV KRPRLESSLP IYPQRPGEKE CAFYMRTRTC KYEETCKFDH 60 PQWVPEGGIP NWKEVIIFHF FRSIYSMSIC SKLFLKMYML FPKSQLYCH

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	1e-171	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020200959.1	4e-47	zinc finger CCCH domain-containing protein 8 isoform X2
Swissprot	Q5ZDJ6	2e-38	C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBL	A0A446NI31	7e-77	A0A446NI31_TRITD; Uncharacterized protein
STRING	Traes_3AL_2A3EA5AD5.1	1e-77	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5816	37	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	6e-33	floral homeotic protein (HUA1)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhu RS,Xu ZF,Lin MC Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8. J Chem Phys, 2004. 120(14): p. 6566-73 [PMID:15267548] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]