PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_35CA14632.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 217aa    MW: 24522.8 Da    PI: 9.8233
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_35CA14632.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-0583103323
                            ETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                            C++Cgk F r  nL+ H r H
  Traes_3AL_35CA14632.1  83 CEICGKGFQRDQNLQLHRRGH 103
                            *******************88 PP
2zf-C2H212.60.0004158180123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            +kC +C+k +  +s+ k H + +
  Traes_3AL_35CA14632.1 158 WKCDKCSKKYAVQSDWKAHSKIC 180
                            58*****************9876 PP
3zf-C2H2130.00031188206523
                            TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                            dCg++Fsr++++ +H   +
  Traes_3AL_35CA14632.1 188 DCGTVFSRRDSFITHRAFC 206
                            9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-580103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.74E-880103No hitNo description
SMARTSM003550.07681103IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.48981103IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SMARTSM00355130123153IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-4146179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.74E-8153178No hitNo description
SMARTSM00355150158178IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MYHHHLQQQQ QQRGEAEAAD QDQDSSMSNL TTSASASAKP PPPPPPTPAS NKRKRSLPGN  60
PDPESEVVAL SPATLMATNR FLCEICGKGF QRDQNLQLHR RGHNLPWKLK QRGSKEVVRK  120
KVYICPEASC VHHDPSRALG DLTGIKKHFF RKHGEKKWKC DKCSKKYAVQ SDWKAHSKIC  180
GTREYKCDCG TVFSRRDSFI THRAFCDALT EESNKAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-35154212361Zinc finger protein JACKDAW
5b3h_F3e-35154212361Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107120KLKQRGSKEVVRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3628550.0AK362855.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2010K06.
GenBankAK3753510.0AK375351.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3091O14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231936.11e-133protein indeterminate-domain 7
SwissprotQ9SCQ61e-108IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A3B6EG961e-160A0A3B6EG96_WHEAT; Uncharacterized protein
TrEMBLA0A446NG831e-160A0A446NG83_TRITD; Uncharacterized protein
STRINGTraes_3AL_35CA14632.11e-163(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.13e-98indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  3. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  4. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]