PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_5490CF370.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bZIP
Protein Properties Length: 437aa    MW: 48083.8 Da    PI: 6.9674
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_5490CF370.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.39.2e-10152192545
                            CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                            k  rr+++NReAAr+sR+RKka+i++Le    +L++  ++L
  Traes_3AL_5490CF370.1 152 KSLRRLAQNREAARKSRLRKKAYIQNLESSRLKLTQLEQEL 192
                            788*************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.7E-7148211IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.174150194IPR004827Basic-leucine zipper domain
CDDcd147086.78E-22152204No hitNo description
SuperFamilySSF579593.06E-7152195No hitNo description
PfamPF001703.2E-7152192IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.4E-7153196No hitNo description
PROSITE patternPS000360155170IPR004827Basic-leucine zipper domain
PfamPF141444.4E-32234309IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MQPSRVADFG ALAHSAGFRI EDLANFSTNN LFNLKPNTHA YTSEPLQFGN YGKSISPTDL  60
ATTAAAAAAV TAVDPQALLQ QKGAQPNLVA LRTHNNDNWG ESSMADTSPR TDTSTDPDID  120
IDERNQMFEQ GQLAAPTASD SSDKSRDKLD HKSLRRLAQN REAARKSRLR KKAYIQNLES  180
SRLKLTQLEQ ELQRARQQGI FISSSGDQSQ SAGGNGAVAF DMEYARWLEE HNKHINELRA  240
AANAHAGDDD LRKIVDSIMA QYDEFFRLKG VAAKADVFHV LSGMWKTPAE RCFMWLGGFR  300
SSELLKLLAG QLEPLTEQQL TGICNLQQSS QQAEDALSQG MEALQQSLAE TLSSGSLGPA  360
GSSGNVASYM GQMAMAMGKL GTLENFLRQA DNLRLQTLQQ MQRILTTRQS ARALLAISDY  420
FSRLRALSSL WLARPRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00492DAPTransfer from AT5G06950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankWHTHBP1BC10.0D12921.2 Triticum aestivum mRNA for transcription factor HBP-1b(c1), partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180345.10.0transcription factor HBP-1b(c1) isoform X1
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A3B6EL620.0A0A3B6EL62_WHEAT; Uncharacterized protein
TrEMBLA0A446NSR00.0A0A446NSR0_TRITD; Uncharacterized protein
TrEMBLM7Z6D70.0M7Z6D7_TRIUA; Transcription factor HBP-1b(C1)
STRINGTraes_3AL_5490CF370.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-124bZIP family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]