PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_55A3F252C.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 214aa    MW: 23072 Da    PI: 7.7406
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_55A3F252C.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.31.7e-135397347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           +W++eE+ l++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qk+
  Traes_3AL_55A3F252C.1 53 PWSEEEHRLFLVGLEKLGKGDWRGISRSYVTTRTPTQVASHAQKF 97
                           8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.40346102IPR017930Myb domain
SuperFamilySSF466892.92E-1747103IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-1749101IPR006447Myb domain, plants
SMARTSM007178.5E-1050100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-105093IPR009057Homeodomain-like
CDDcd001677.27E-105398No hitNo description
PfamPF002498.7E-115396IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
QLAVAPSSIV SPSSSSSSSV LLSIDEGLER ASNGYLSDGP HGRLVQERKK GVPWSEEEHR  60
LFLVGLEKLG KGDWRGISRS YVTTRTPTQV ASHAQKFFLR QSSMGKKKRR SSLFDMVPIC  120
ENGIRVSEPL TNNSGDASTS LPRYKSPDMA SIDLNSTQED DMAMAGVPLL SASPRAPFPA  180
VLMEQPPHGH GHGHHCSPLE LELGMSLSPP SIGT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105109KKKRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519230.0JF951923.1 Aegilops speltoides clone TaMYB40 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184061.11e-127transcription factor SRM1-like
TrEMBLA0A3B6EGN51e-154A0A3B6EGN5_WHEAT; Uncharacterized protein
TrEMBLA0A446NHE01e-154A0A446NHE0_TRITD; Uncharacterized protein
STRINGTraes_3AL_55A3F252C.11e-155(Triticum aestivum)
STRINGTraes_3B_AE7851A5F.11e-154(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49323066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.13e-40MYB_related family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]