PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_6DE434492.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 168aa    MW: 18762.4 Da    PI: 9.5877
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_6DE434492.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.32.9e-203266135
                   GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                           C  C+ttkTplWR gp+g+k+LCnaCG++yrk+++
  Traes_3AL_6DE434492.1 32 CDDCNTTKTPLWRGGPNGPKSLCNACGIRYRKRRR 66
                           99******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.6242662IPR000679Zinc finger, GATA-type
SMARTSM004019.2E-172678IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.14E-132666No hitNo description
Gene3DG3DSA:3.30.50.108.6E-163066IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.08E-163181No hitNo description
PROSITE patternPS0034403257IPR000679Zinc finger, GATA-type
PfamPF003205.1E-183266IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MSPAEMESHK MVEVEAAADP EERTASGDPK ACDDCNTTKT PLWRGGPNGP KSLCNACGIR  60
YRKRRRVAMG LDPEAKRKPK RDDAILSKAE ASSTKEEEEE EDNKASTNKI KTKTTTHTVE  120
LHMVGFAKDA VLKQRRRMRM RRRKPSCLGE EERAAILLMS LSSGVIYA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16165RKRRR
26266KRRRV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3641261e-80AK364126.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2021P18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158673.11e-76GATA transcription factor 15-like
TrEMBLA0A3B6ES981e-119A0A3B6ES98_WHEAT; Uncharacterized protein
STRINGTraes_3AL_6DE434492.11e-120(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.12e-20GATA transcription factor 15
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]