PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_7FD4FF43C.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 186aa    MW: 20831 Da    PI: 8.4799
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_7FD4FF43C.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.31.4e-09531127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                           ++++ C+f+ +tG C yG +C+F+H++
  Traes_3AL_7FD4FF43C.1  5 PGEVDCSFYIKTGSCMYGRTCRFNHPE 31
                           57899********************96 PP
2zf-CCCH35.41.8e-117599226
                           -S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                           ++  C+f+ +tG+Ck+ ++CkF+H+
  Traes_3AL_7FD4FF43C.1 75 GETVCDFYKKTGFCKFSEKCKFHHP 99
                           6789********************9 PP
3zf-CCCH40.64.3e-13132155427
                            ---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                            e C ++++tG Ck+G +CkF H+p
  Traes_3AL_7FD4FF43C.1 132 EACAYYMKTGACKFGVQCKFDHPP 155
                            78********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.2E-4431IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.385432IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-6631IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6932IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-41031IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-772101IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-673100IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.16473101IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-97599IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-67899IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-6128155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.601128156IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-6131154IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10132155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-5132153IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MPIRPGEVDC SFYIKTGSCM YGRTCRFNHP ERHIQASVVP GEMLNPAVKF LPSFDFRVTH  60
VPIEPEPITY PQRPGETVCD FYKKTGFCKF SEKCKFHHPV DRSAPDSIAK WEPSQQPVTL  120
TVAGFPRRED AEACAYYMKT GACKFGVQCK FDHPPLGEAI AKVSKHGEGK EGGKKKVVGL  180
SYVLEN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2516310.0AK251631.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf129b04, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200959.11e-121zinc finger CCCH domain-containing protein 8 isoform X2
SwissprotQ5ZDJ67e-77C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLA0A453F1U51e-123A0A453F1U5_AEGTS; Uncharacterized protein
TrEMBLA0A453F2321e-123A0A453F232_AEGTS; Uncharacterized protein
TrEMBLA0A453F2681e-124A0A453F268_AEGTS; Uncharacterized protein
STRINGTraes_3AL_7FD4FF43C.11e-136(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.13e-54floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]