PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_3AL_8260356E3.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-other

Protein Properties

Length: 58aa MW: 7065.13 Da PI: 10.1076

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3AL_8260356E3.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	36.6	7.6e-12	5	42	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Traes_3AL_8260356E3.1 5 FEHflHPYPTDGDKQMLAKQTGLTRNQVSNWFINARVR 42 554459******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-25	1	50	IPR009057	Homeodomain-like
SMART	SM00389	4.7E-4	1	50	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.63E-16	2	52	IPR009057	Homeodomain-like
Pfam	PF05920	8.5E-21	3	42	IPR008422	Homeobox KN domain
CDD	cd00086	1.84E-10	4	47	No hit	No description
PROSITE profile	PS50071	12.001	5	46	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	21	44	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 58 aa Download sequence Send to blast
RGWLFEHFLH PYPTDGDKQM LAKQTGLTRN QVSNWFINAR VRLWKPMVEE IHNLEMRQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	3e-16	1	50	14	63	Homeobox protein Meis2
3k2a_B	3e-16	1	50	14	63	Homeobox protein Meis2
4xrm_A	2e-16	1	50	14	63	Homeobox protein Meis2
4xrm_B	2e-16	1	50	14	63	Homeobox protein Meis2
5bng_A	2e-16	1	50	10	59	Homeobox protein Meis2
5bng_B	2e-16	1	50	10	59	Homeobox protein Meis2
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Required for specifying floral primordia and establishing early internode patterning events during inflorescence development. {ECO:0000269\|PubMed:15120075, ECO:0000269\|PubMed:16741748}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB546647	2e-80	AB546647.1 Triticum aestivum WBLH4 mRNA for BEL1-type homeodomain protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015688150.1	7e-36	PREDICTED: BEL1-like homeodomain protein 9, partial
Swissprot	Q9SJJ3	2e-30	BLH8_ARATH; BEL1-like homeodomain protein 8
TrEMBL	A0A0D3EW88	2e-34	A0A0D3EW88_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0JR12	2e-34	A0A0E0JR12_ORYPU; Uncharacterized protein
TrEMBL	A0A1D6N756	1e-34	A0A1D6N756_MAIZE; BEL1-like homeodomain protein 9
TrEMBL	A0A453FXH1	6e-35	A0A453FXH1_AEGTS; Uncharacterized protein
STRING	OS01T0848400-01	2e-35	(Oryza sativa)
STRING	OPUNC01G36100.1	4e-35	(Oryza punctata)
STRING	Traes_3AL_8260356E3.1	3e-37	(Triticum aestivum)
STRING	OBART01G37260.1	3e-35	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7715	31	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27990.1	9e-33	BEL1-like homeodomain 8

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Khan M, et al. Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis. Plant Physiol., 2015. 169(3): p. 2166-86 [PMID:26417006]