PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_9D2735F60.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARR-B
Protein Properties Length: 519aa    MW: 57469.7 Da    PI: 5.2291
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_9D2735F60.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.97.2e-26126179155
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+gLt+e+v+SHLQkYRl
  Traes_3AL_9D2735F60.1 126 KARVVWSVDLHQKFVNAVNQI-GFDKVGPKKILDLMNVPGLTRENVASHLQKYRL 179
                            68*******************.9*******************************8 PP
2Response_reg33.32.6e-1215653109
                            CTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
           Response_reg  53 mpgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                            mp+mdG++ll++i  e  +lp+i+++  ge + + + ++ Ga d+l Kp+ ++el++
  Traes_3AL_9D2735F60.1   1 MPDMDGFKLLEHIGLEM-DLPVIMMSIDGETSRVMKGVQHGACDYLLKPVRMKELRN 56 
                            9************6654.8***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521724.98E-15169IPR011006CheY-like superfamily
PfamPF000722.7E-9157IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011023.706162IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.53E-12161No hitNo description
Gene3DG3DSA:3.40.50.23007.0E-21180No hitNo description
PIRSFPIRSF0363921.9E-1221510IPR017053Response regulator B-type, plant
SuperFamilySSF466898.96E-18123182IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-28124183IPR009057Homeodomain-like
TIGRFAMsTIGR015578.6E-23126179IPR006447Myb domain, plants
PfamPF002497.8E-8128178IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MPDMDGFKLL EHIGLEMDLP VIMMSIDGET SRVMKGVQHG ACDYLLKPVR MKELRNIWQH  60
VYRKKMHEVK EIEGHDSCDD LQILRYGFEG FDEKGLFMTV DSDPTRKRKD MDHGDQDSSD  120
GATAKKARVV WSVDLHQKFV NAVNQIGFDK VGPKKILDLM NVPGLTRENV ASHLQKYRLY  180
LGRLQKQNEE RILGSGRQDF STKGPSSENL NLRSSFQEQP SNTSSGYPHA SQKIQGQSSL  240
SDSQLEETKR TVPLPAPDRS MNSVSSAAEP QNVAGVSPIG GVLSFKGLPV NQDRKPSETM  300
ILECQAWTGG VPAKQFMQYP KHNHARCDLL GDYACLPKPD LEHPTAPGHL FTPPPLISMS  360
CSTEMDARNF SDVKPALLDC IKSFSPALTC TADSVSVQIS DSVVTATNAA DRKFSSVEGL  420
PSTKDCYFGQ TSNQGSWLRS QEEPNIICGA DFASLPEDLP GYPLQGGLSF ENVGLSSIDL  480
FHYNDAMILS GLQSNWYDDQ DHFSSETTDY PLMDGCLFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-18125184463ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147288.10.0two-component response regulator ORR26-like
SwissprotQ5N6V80.0ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A3B6EPF90.0A0A3B6EPF9_WHEAT; Two-component response regulator
STRINGTraes_3AL_9D2735F60.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59003752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.13e-75response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]