PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_C5E13251D.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bZIP
Protein Properties Length: 105aa    MW: 11928.5 Da    PI: 11.5253
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_C5E13251D.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.96.6e-112862438
                           XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeL 38
                           +k err+++NReAA++sR+RKka++++Le+    L
  Traes_3AL_C5E13251D.1 28 SKTERRLAQNREAAKKSRLRKKAYVQNLETSRVRL 62
                           799*************************9854444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.8E-625103IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.9E-82771No hitNo description
PROSITE profilePS502179.2892771IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.13E-82872No hitNo description
PfamPF001702.7E-82964IPR004827Basic-leucine zipper domain
PROSITE patternPS0003603247IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
LRTSFFPLVS FAQRKHGSTR KDGKLVDSKT ERRLAQNREA AKKSRLRKKA YVQNLETSRV  60
RLQQMEQELQ RARSQGIFLG GGGAGGDMSP GNQRRSSELF YSDHC
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250|UniProtKB:Q7X993, ECO:0000269|PubMed:22353606}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4243221e-123JX424322.1 Triticum urartu basic leucine zipper protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020190189.11e-44transcription factor LG2-like isoform X1
RefseqXP_020190190.11e-44transcription factor LG2-like isoform X1
RefseqXP_020190191.11e-44transcription factor LG2-like isoform X2
RefseqXP_020190192.11e-44transcription factor LG2-like isoform X3
RefseqXP_020190193.11e-44transcription factor LG2-like isoform X4
RefseqXP_020190194.15e-45transcription factor LG2-like isoform X5
SwissprotQ5N7C73e-38LG2_ORYSJ; Transcription factor LG2
TrEMBLA0A453FZ521e-54A0A453FZ52_AEGTS; Uncharacterized protein
STRINGTraes_3AL_C5E13251D.16e-71(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2537845
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.27e-21bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation.
    Plant Methods, 2012. 8(1): p. 6
    [PMID:22353606]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]