PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_C729D25F8.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 243aa    MW: 26307.7 Da    PI: 7.7731
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_C729D25F8.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.65e-122351247
                           HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           ++ a++ +G++ W++Ia+ +  gRt++ +k++w++ 
  Traes_3AL_C729D25F8.1  2 IISAHAIHGNK-WASIAKLLV-GRTDNAIKNHWNST 35
                           689********.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0029138IPR001005SANT/Myb domain
PROSITE profilePS5129420.976140IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-14137IPR009057Homeodomain-like
CDDcd001676.39E-8136No hitNo description
PfamPF002495.6E-10235IPR001005SANT/Myb domain
SuperFamilySSF466892.73E-9242IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MIISAHAIHG NKWASIAKLL VGRTDNAIKN HWNSTLRRRY CTGTRCTRSA SAEQPMREMS  60
RAVSEERWPL SGPSSFSVME VKEAPVQTVS ETSAGALQIR DINNCSTEAV DRSYPVRPVA  120
TVGAFRPYSL GPAQQMQMEM SSSTKFVPTI QALTPEIAVS KFADTTCFAA DVPNKCGHGC  180
CSAEEQPRNN SLLGPEFKEF IDHPPILSSS FASLVSEISS IAWMNGGLQS SNSGNLVQSN  240
PPA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN5644270.0FN564427.1 Triticum aestivum chromosome 3B-specific BAC library, contig ctg0079b.
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165805.11e-176transcription factor MYB25-like
TrEMBLA0A3B6ENI91e-178A0A3B6ENI9_WHEAT; Uncharacterized protein
TrEMBLM7Y5701e-179M7Y570_TRIUA; Transcription factor MYB44
STRINGTraes_3AL_C729D25F8.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.14e-33myb domain protein 109
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]