PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_3AL_D0053C177.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

WOX

Protein Properties

Length: 194aa MW: 21952.2 Da PI: 7.7648

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3AL_D0053C177.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.8	1.4e-21	22	82	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps++++++++++l +++e++V++WFqNrRa+ k+ Traes_3AL_D0053C177.2 22 RQRWTPTQMQLQILESIFDQgNGTPSKQKIKDITAELsqhgQISETNVYNWFQNRRARSKR 82 89***************99************************************97 PP
2	Wus_type_Homeobox	104	1e-33	21	84	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPt+ Q++iLe+++++G tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq Traes_3AL_D0053C177.2 21 ARQRWTPTQMQLQILESIFDQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSKRKQ 84 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-17	16	87	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.819	18	83	IPR001356	Homeobox domain
SMART	SM00389	5.3E-14	20	87	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.67E-18	21	89	IPR009057	Homeodomain-like
CDD	cd00086	1.92E-13	22	84	No hit	No description
Pfam	PF00046	2.2E-19	22	82	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MRLGNLYCDP LMVHGGHKIT ARQRWTPTQM QLQILESIFD QGNGTPSKQK IKDITAELSQ 60 HGQISETNVY NWFQNRRARS KRKQAASSLP SNTESEAEGD EDSPTDKKPR SDGSQQQGMA 120 VRAHNPERIS EMHRHFDAAE REQVRGPMYG SSNDNGPRPS GGLGQMSFYE NVMSNPRIDQ 180 FFQYRTGESF DMSG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	83	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020188039.1	1e-144	WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	1e-86	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A3B6EK84	1e-144	A0A3B6EK84_WHEAT; Uncharacterized protein
TrEMBL	A0A446NTD3	1e-144	A0A446NTD3_TRITD; Uncharacterized protein
STRING	TRIUR3_23636-P1	1e-145	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	4e-38	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]