PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_D2BD92865.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 392aa    MW: 43649.6 Da    PI: 9.4137
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_D2BD92865.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.81.1e-102248127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                           ++++ C +++rtG C++G +C+F+H++
  Traes_3AL_D2BD92865.2 22 PGEPDCTYYLRTGLCRFGMSCRFNHPQ 48
                           5789*********************97 PP
2zf-CCCH38.22.3e-126993327
                           S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                           +++C+++++tGtCk+G++CkF+H++
  Traes_3AL_D2BD92865.2 69 QPECQYYLKTGTCKFGPTCKFHHPR 93
                           799********************96 PP
3zf-CCCH38.42.1e-12115139327
                            S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                            +++C ++++tG+CkyG++CkF+H++
  Traes_3AL_D2BD92865.2 115 ERECAYYLKTGQCKYGNTCKFNHPE 139
                            799********************96 PP
4zf-CCCH34.82.8e-11276301227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                            ++++C ++ +tG Ck+G+ CkF+H++
  Traes_3AL_D2BD92865.2 276 DQPECIYYIKTGDCKFGAVCKFHHPR 301
                            689*********************96 PP
5zf-CCCH41.81.7e-13321347127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                            +++elC+f++r+G+Ck+G +CkF H++
  Traes_3AL_D2BD92865.2 321 PGEELCKFYSRYGICKFGVNCKFDHPM 347
                            689**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.7092149IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-52148IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-82348IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-52650IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-42748IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-66693IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.6946694IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-106993IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-67095IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-57294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.568112140IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6112138IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5112139IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-10115139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-5118138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.019274302IPR000571Zinc finger, CCCH-type
SMARTSM003560.0071274301IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-7276301IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-5277301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.971320348IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-7320347IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-6322347IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10322347IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-5324345IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MWQQMAMSSG ATMQSGPYPV RPGEPDCTYY LRTGLCRFGM SCRFNHPQDR NTAIASARMK  60
GEYPERVGQP ECQYYLKTGT CKFGPTCKFH HPREKAGIAG MVQLNTLGYP LRPNERECAY  120
YLKTGQCKYG NTCKFNHPEI FNAVASSRGS PIYPPVHNSG STGPHSYTGT MASWTYPRGS  180
FIPSPRWQSP SNYTPMIVPQ GLVQVPSWNS YPGQMVPVSS PESRLQSPGA QQYYGTSRQG  240
EASAGNQGMQ SSYRSSSFPA PQYALQRENV FPERPDQPEC IYYIKTGDCK FGAVCKFHHP  300
RVRSQPPPDC ILSPMGLPLR PGEELCKFYS RYGICKFGVN CKFDHPMAAP MGVYAYGXAT  360
LPPRRPMLPW LGVSWSPPPG LRTPPKARLP GI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3679460.0AK367946.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2065F23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151757.10.0zinc finger CCCH domain-containing protein 12-like
SwissprotQ5JLB50.0C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A446P0B60.0A0A446P0B6_TRITD; Uncharacterized protein
TrEMBLM7YT470.0M7YT47_TRIUA; Zinc finger CCCH domain-containing protein 12
STRINGTraes_3AL_D2BD92865.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-143zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]