PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_D6813CBDE.1
Common NameTRAES_3BF026400090CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 92aa    MW: 10846.5 Da    PI: 10.4777
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_D6813CBDE.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.71.1e-192073356
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                           k+ +++keq + Lee F+ n+++s +++e LA kl+L  rqV vWFqNrRa+ k
  Traes_3AL_D6813CBDE.1 20 KKLRLSKEQSRLLEESFRLNHTLSPKQKEALAIKLKLRPRQVEVWFQNRRARTK 73
                           67789***********************************************98 PP
2HD-ZIP_I/II108.74.1e-352091273
            HD-ZIP_I/II  2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydal 73
                           kk+rlskeq++lLEesF+ +++L+p++K++la +L+l+prqv+vWFqnrRARtk+k++E+++e+Lkr++ +l
  Traes_3AL_D6813CBDE.1 20 KKLRLSKEQSRLLEESFRLNHTLSPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKHTEMECEYLKRCFGSL 91
                           9*******************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-18673IPR009057Homeodomain-like
SuperFamilySSF466891.15E-191275IPR009057Homeodomain-like
PROSITE profilePS5007116.861575IPR001356Homeobox domain
SMARTSM003896.6E-161779IPR001356Homeobox domain
CDDcd000861.93E-131876No hitNo description
PfamPF000466.2E-171973IPR001356Homeobox domain
PROSITE patternPS0002705073IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MGGVEEDEEE RGAGGPHRPK KLRLSKEQSR LLEESFRLNH TLSPKQKEAL AIKLKLRPRQ  60
VEVWFQNRRA RTKLKHTEME CEYLKRCFGS LT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1457271e-112AF145727.1 Oryza sativa homeodomain leucine zipper protein (Oshox3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154762.19e-60homeobox-leucine zipper protein HOX3
SwissprotQ0JKX13e-58HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH383e-58HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A3B6EKF55e-59A0A3B6EKF5_WHEAT; Uncharacterized protein
STRINGTraes_3AL_D6813CBDE.11e-60(Triticum aestivum)
STRINGTraes_3B_436FBF290.11e-59(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP68263549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.17e-39homeobox-leucine zipper protein 17
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]