PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_F0BD265DF.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 114aa    MW: 13261.8 Da    PI: 8.52
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_F0BD265DF.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.25.8e-183589256
                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                           r+ +++t++q+++Le +F  + +p++++r  +++++gLt +qVk+WFqN+R+ +k
  Traes_3AL_F0BD265DF.1 35 RRLQRLTPQQTQVLEGFFGICAHPDENQRMGMSESTGLTMQQVKFWFQNKRTHMK 89
                           666899**********************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-191885IPR009057Homeodomain-like
SuperFamilySSF466891.03E-171990IPR009057Homeodomain-like
PROSITE profilePS5007114.8033191IPR001356Homeobox domain
SMARTSM003891.0E-133395IPR001356Homeobox domain
PfamPF000461.5E-153490IPR001356Homeobox domain
CDDcd000869.29E-133490No hitNo description
PROSITE patternPS0002706689IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MPQPQQDRPA RDNDLDISQG NSDGQDGAEG SQPKRRLQRL TPQQTQVLEG FFGICAHPDE  60
NQRMGMSEST GLTMQQVKFW FQNKRTHMKH VTGKEETYRM KAQNEMLREE NKRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF3320360.0JF332036.1 Triticum turgidum subsp. durum HD-Zip IV transcription factor GL9H2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164122.12e-69homeobox-leucine zipper protein TF1-like
SwissprotQ5ZAY03e-29TF1_ORYSJ; Homeobox-leucine zipper protein TF1
TrEMBLM7YX179e-75M7YX17_TRIUA; Homeobox-leucine zipper protein TF1
STRINGTraes_3AL_F0BD265DF.12e-80(Triticum aestivum)
STRINGTRIUR3_16941-P11e-75(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149301619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.19e-16HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]