PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_F42853DA5.1
Common NameTRAES_3BF023000040CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 53aa    MW: 6371.29 Da    PI: 11.2311
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_F42853DA5.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox17.66.6e-061154256
                           HHHHHHHHHHHHHHH CS
               Homeobox 42 rqVkvWFqNrRakek 56
                           rqVk+WFqNrR++ k
  Traes_3AL_F42853DA5.1  1 RQVKFWFQNRRTQIK 15
                           7**********9977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.31E-6126IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-4114IPR009057Homeodomain-like
PROSITE profilePS500719.507117IPR001356Homeobox domain
Gene3DG3DSA:1.20.5.1708.0E-41543No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 53 aa     Download sequence    Send to blast
RQVKFWFQNR RTQIKATQER HENSLLKSEL ENLQKENRAM RQLAKGPSRC PSC
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703063e-48HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168333.16e-28homeobox-leucine zipper protein ROC9
SwissprotQ5JMF32e-23ROC9_ORYSJ; Homeobox-leucine zipper protein ROC9
TrEMBLA0A446NPR73e-30A0A446NPR7_TRITD; Uncharacterized protein
TrEMBLA0A453FK083e-30A0A453FK08_AEGTS; Uncharacterized protein
STRINGTraes_3AL_F42853DA5.12e-31(Triticum aestivum)
STRINGTraes_3B_1E2F1C353.11e-28(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15929915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.11e-12HD-ZIP family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]