PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AS_09025DA2E.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 932aa    MW: 102329 Da    PI: 5.0245
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AS_09025DA2E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.86e-195096148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd++l +av+ + g++Wk+Ia++++  Rt+ qc +rwqk+l
  Traes_3AS_09025DA2E.1 50 KGNWTPEEDDILSRAVQTYNGKNWKKIAECFP-DRTDVQCLHRWQKVL 96
                           79******************************.************986 PP
2Myb_DNA-binding61.32.1e-19102148148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            +g+W++eEd+++v+ vk++G++ W+tIa+ ++ gR +kqc++rw+++l
  Traes_3AS_09025DA2E.1 102 KGPWSKEEDDIIVEMVKKYGPKKWSTIAQALP-GRIGKQCRERWHNHL 148
                            79******************************.*************97 PP
3Myb_DNA-binding49.11.3e-15154196145
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                            +++WT+eE+  l++a++++G++ W+   + ++ gRt++++k++w+
  Traes_3AS_09025DA2E.1 154 KDAWTQEEEITLIHAHRMYGNK-WAELTKFLP-GRTDNSIKNHWN 196
                            679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.4374596IPR017930Myb domain
SuperFamilySSF466894.28E-1948110IPR009057Homeodomain-like
SMARTSM007173.0E-174998IPR001005SANT/Myb domain
PfamPF002498.4E-175096IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-2552113IPR009057Homeodomain-like
CDDcd001678.24E-155296No hitNo description
PROSITE profilePS5129432.21597152IPR017930Myb domain
SuperFamilySSF466892.43E-3199195IPR009057Homeodomain-like
SMARTSM007171.2E-18101150IPR001005SANT/Myb domain
CDDcd001674.31E-16104148No hitNo description
PfamPF139213.5E-18105165No hitNo description
Gene3DG3DSA:1.10.10.601.5E-26114155IPR009057Homeodomain-like
SMARTSM007171.9E-14153201IPR001005SANT/Myb domain
PROSITE profilePS5129419.934153203IPR017930Myb domain
CDDcd001673.81E-11156196No hitNo description
Gene3DG3DSA:1.10.10.601.5E-21156203IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 932 aa     Download sequence    Send to blast
MTSDKGKASK KAGEASGQPS TTHEGKVSNE PQRQRSLNGR TTGPTRRSTK GNWTPEEDDI  60
LSRAVQTYNG KNWKKIAECF PDRTDVQCLH RWQKVLNPEL IKGPWSKEED DIIVEMVKKY  120
GPKKWSTIAQ ALPGRIGKQC RERWHNHLNP GINKDAWTQE EEITLIHAHR MYGNKWAELT  180
KFLPGRTDNS IKNHWNSSVK KKIDSYMSSG LLAQVSRLPL IEHHAHFNSS PAITQQNSED  240
SDSNAVREVE DSSGCSQSSL AMVSCSQAQD TNLALSCDLH VNADPSKTEA HDSQSSMCQE  300
GYTSTEGVAS ALSEVHCHAS SSRFGSDKLL QQEISQRMDL QMDIDETPGN SMFENNQTIC  360
STSNNERPML QYEIAPDMPI SVLTNVSGAE PKLHFMSEAD FSSPNCLKSE LWQDVSFQSL  420
LSGPDVVDAD SLSRLNHHSD THSSEADTHF LAAPNPSHTS NPSSMMMAAY GQDPSLSVPQ  480
SLIPNGLSDV ADEKSREMQV SGSEMITCMH DSFGDSEQFA TPGSTDGRHG ASAIIERIPE  540
YGDKQLTDAE EPASSMAKEP PLAQGEAASD EKQDKGALFY EPPRFPSMDV PFVSCDLVTS  600
GDLQEYSPLG IRQLMRSTMS VTTPLRLWGS PTHDESPDVV LKSAAKSFIS TPSILKKRPR  660
DLSSPTLEKG IEKKSRTEQD SGVLGTSSVS AQTSCMHAIK DEGIVTESVF CTNRSSSFKP  720
LEKKLEFCDE NKGNLGESEQ AKDGRNAQNN HPVDEHARGE QCSTANMVNI NDEPPATVLV  780
EHKGNDISDH GANAMYQKMN TNLQALSACK ETFAKSKSGE LIAEKSSPCI QMDYEYVNIL  840
ADTPGVKRGL ESPSAWKSPW FIDMQYKGSY FISPADTTYD ALGLMKRINV QSASALADAR  900
EVLASGSQCG NKDFDEENKE NVDAENETGT GK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C7e-67502036159MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-67502036159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHE9968270.0HE996827.1 Triticum aestivum cv. Arina SNP, chromosome 3B, clone Taes_arina_ctg_69800.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153262.10.0transcription factor MYB3R-1-like isoform X1
TrEMBLA0A3B6ED960.0A0A3B6ED96_WHEAT; Uncharacterized protein
TrEMBLA0A446NAB20.0A0A446NAB2_TRITD; Uncharacterized protein
STRINGTraes_3AS_09025DA2E.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24953879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.21e-161Homeodomain-like protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]